MLOC_12967 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.5836.411166.903795.28553
LEAShoots from the seedlings (10 cm shoot stage)8.963769.400128.833496.40137
INF1Young developing inflorescences (5mm)8.918128.8915910.53446.10433
INF2Developing inflorescences (1-1.5 cm)11.880411.076410.52799.87105
ROORoots from the seedlings (10 cm shoot stage)7.042277.232689.083946.96653
NODDeveloping tillers at six leaf stage, 3rd internode13.77089.7619410.740227.6864
CAR5Developing grain, bracts removed (5 DPA)10.211410.099912.76668.02689
CAR15Developing grain, bracts removed (15 DPA)4.472144.114534.423967.44827



CDS Structure of MLOC_12967






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12967.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374843NoneNoneNoneNone
MLOC_12967.5CUST_1247_PI427708080AvailableAvailablecontig_1564520 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g40000.3 +1 3e-84 259 128/135 (95%) 13102.m04445 protein trafficking protein particle complex subunit, putative, expressed
TAIR PP10 AT1G80500.1 +1 2e-77 241 119/135 (88%) SNARE-like superfamily protein | chr1:30271195-30272431 FORWARD LENGTH=135