MLOC_12952 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1118960.1331510.1368580.113476
LEAShoots from the seedlings (10 cm shoot stage)0.4673620.8578720.8022570.505884
INF1Young developing inflorescences (5mm)0.0861550.1194950.153540.0843859
INF2Developing inflorescences (1-1.5 cm)0.08559680.07154830.08514950.0783666
ROORoots from the seedlings (10 cm shoot stage)0.608580.3599230.5591030.427872
NODDeveloping tillers at six leaf stage, 3rd internode3.14523.044188.0565910.8092
CAR5Developing grain, bracts removed (5 DPA)0.06832710.06252160.07253520.0560089
CAR15Developing grain, bracts removed (15 DPA)00.01351190.01787440.0449237



CDS Structure of MLOC_12952






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12952.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12952.1CUST_9003_PI427708080AvailableAvailablecontig_1564482 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g05730.1 -2 2e-75 214 102/182 (56%) 13112.m00580 protein bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed
TAIR PP10 AT3G52720.1 -2 2e-40 140 73/178 (41%) | Symbols: CAH1, ATACA1, ACA1 | alpha carbonic anhydrase 1 | chr3:19538804-19541116 REVERSE LENGTH=284