- Predicted Gene MLOC_12940
MLOC_12940 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_12940_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_12940_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 0.0546619 | 0.202312 | 0.017266 | 0.135813 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.0203623 | 0 | 0.0201576 | 0.0195971 |
INF1 | Young developing inflorescences (5mm) | 1.53578 | 1.76403 | 1.30771 | 1.41284 |
INF2 | Developing inflorescences (1-1.5 cm) | 1.70884 | 2.02732 | 1.41464 | 2.11879 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.075067 | 0.0953015 | 0.222697 | 0.142349 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.0191575 | 0.0111008 | 0 | 0.0460383 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.39078 | 0.384834 | 0.422329 | 0.422882 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.020663 | 0 | 0.0300655 | 0.0556269 |
CDS Structure of MLOC_12940
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12940.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g52540.1 |
-3 |
0.0 |
739 |
455/891 (51%) |
13104.m05389 protein retrotransposon protein, putative, unclassified, expressed |
TAIR PP10 |
AT1G31280.1 |
-3 |
2e-136 |
444 |
317/874 (36%) |
| Symbols: AGO2 | Argonaute family protein | chr1:11181777-11185112 FORWARD LENGTH=1014 |