MLOC_12940 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.05466190.2023120.0172660.135813
LEAShoots from the seedlings (10 cm shoot stage)0.020362300.02015760.0195971
INF1Young developing inflorescences (5mm)1.535781.764031.307711.41284
INF2Developing inflorescences (1-1.5 cm)1.708842.027321.414642.11879
ROORoots from the seedlings (10 cm shoot stage)0.0750670.09530150.2226970.142349
NODDeveloping tillers at six leaf stage, 3rd internode0.01915750.011100800.0460383
CAR5Developing grain, bracts removed (5 DPA)0.390780.3848340.4223290.422882
CAR15Developing grain, bracts removed (15 DPA)0.02066300.03006550.0556269



CDS Structure of MLOC_12940






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12940.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12940.1CUST_9000_PI427708080AvailableAvailablecontig_1564449 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g52540.1 -3 0.0 739 455/891 (51%) 13104.m05389 protein retrotransposon protein, putative, unclassified, expressed
TAIR PP10 AT1G31280.1 -3 2e-136 444 317/874 (36%) | Symbols: AGO2 | Argonaute family protein | chr1:11181777-11185112 FORWARD LENGTH=1014