MLOC_12926 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.754818.420619.213323.5983
LEAShoots from the seedlings (10 cm shoot stage)15.04989.4517910.338510.4413
INF1Young developing inflorescences (5mm)30.130935.955840.074734.5929
INF2Developing inflorescences (1-1.5 cm)40.759438.425642.498651.6003
ROORoots from the seedlings (10 cm shoot stage)21.309820.486921.017630.045
NODDeveloping tillers at six leaf stage, 3rd internode6.7509913.957115.928252.3329
CAR5Developing grain, bracts removed (5 DPA)22.960725.319223.312528.8482
CAR15Developing grain, bracts removed (15 DPA)11.979711.402412.811931.9631



CDS Structure of MLOC_12926






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12926.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362362NoneNoneNoneNone
MLOC_12926.1CUST_104_PI427708083AvailableAvailablecontig_1564405 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g29650.1 +3 2e-39 146 79/98 (81%) 13108.m03063 protein RNA recognition motif containing protein, expressed
TAIR PP10 AT4G35785.2 +3 1e-26 108 60/98 (61%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:16953211-16955127 REVERSE LENGTH=239