MLOC_12906 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains52.767841.506546.002846.7694
LEAShoots from the seedlings (10 cm shoot stage)47.254217.746718.918922.7996
INF1Young developing inflorescences (5mm)53.362664.800972.351759.4405
INF2Developing inflorescences (1-1.5 cm)63.36985.131986.360191.1809
ROORoots from the seedlings (10 cm shoot stage)48.919465.235754.792571.2848
NODDeveloping tillers at six leaf stage, 3rd internode60.787684.63410.686006188.397
CAR5Developing grain, bracts removed (5 DPA)163.44192.828193.792192.583
CAR15Developing grain, bracts removed (15 DPA)15.713614.248116.104139.2434



CDS Structure of MLOC_12906






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12906.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251106.1NoneNoneNoneNone
MLOC_12906.1CUST_1238_PI427708080AvailableAvailablecontig_1564351 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40730.1 +1 2e-170 489 230/261 (88%) 13110.m03776 protein expansin precursor, putative, expressed
TAIR PP10 AT1G65680.1 +1 1e-61 207 108/242 (45%) | Symbols: ATEXPB2, EXPB2, ATHEXP BETA 1.4 | expansin B2 | chr1:24427266-24428399 FORWARD LENGTH=273