MLOC_12897 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.129685.657664.791174.6263
LEAShoots from the seedlings (10 cm shoot stage)2.497643.940953.786282.65537
INF1Young developing inflorescences (5mm)0.7069740.8041520.8004830.633628
INF2Developing inflorescences (1-1.5 cm)1.438341.64241.137821.55492
ROORoots from the seedlings (10 cm shoot stage)18.588219.187113.786120.0733
NODDeveloping tillers at six leaf stage, 3rd internode0.554680.360730.1421460.913249
CAR5Developing grain, bracts removed (5 DPA)0.9410740.8406250.6877620.775917
CAR15Developing grain, bracts removed (15 DPA)0.1422540.2059190.2061850.414386



CDS Structure of MLOC_12897






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12897.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365418NoneNoneNoneNone
MLOC_12897.1CUST_1236_PI427708080AvailableAvailablecontig_1564334 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g20949.1 +1 0.0 1964 988/1126 (88%) 13103.m02510 protein phospholipid-transporting ATPase, putative, expressed
TAIR PP10 AT5G04930.1 +1 0.0 1471 734/1110 (66%) | Symbols: ALA1 | aminophospholipid ATPase 1 | chr5:1445509-1449568 FORWARD LENGTH=1158