MLOC_1289 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8802220.7885650.2692080.986854
LEAShoots from the seedlings (10 cm shoot stage)0.3219900.9883130.860274
INF1Young developing inflorescences (5mm)2.395493.349223.797214.04545
INF2Developing inflorescences (1-1.5 cm)2.442372.623191.615683.67916
ROORoots from the seedlings (10 cm shoot stage)01.461381.067084.38328
NODDeveloping tillers at six leaf stage, 3rd internode0.129678000.0125459
CAR5Developing grain, bracts removed (5 DPA)1.709472.473751.636283.08381
CAR15Developing grain, bracts removed (15 DPA)0.2675290.4532260.2001071.21157



CDS Structure of MLOC_1289






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1289.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1289.1CUST_1935_PI427708083AvailableAvailablecontig_111255 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g48410.1 -1 6e-34 119 56/63 (89%) 13105.m05148 protein 50S ribosomal protein L21, chloroplast precursor, putative, expressed
TAIR PP10 AT4G30930.1 -1 3e-23 91 41/54 (76%) | Symbols: NFD1 | Ribosomal protein L21 | chr4:15050170-15051630 REVERSE LENGTH=270