- Predicted Gene MLOC_12843
MLOC_12843 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_12843_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_12843_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 2.25517 | 2.35206 | 3.57689 | 2.6833 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 40.6073 | 82.7353 | 90.0051 | 60.4049 |
INF1 | Young developing inflorescences (5mm) | 0.477846 | 0.588924 | 0.405623 | 0.426724 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.201276 | 0.208146 | 0.110957 | 0.195084 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.308602 | 0 | 0 | 0.055904 |
NOD | Developing tillers at six leaf stage, 3rd internode | 16.1857 | 13.1132 | 16.9114 | 44.2509 |
CAR5 | Developing grain, bracts removed (5 DPA) | 5.86017 | 6.17569 | 6.37216 | 6.17108 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0.253978 | 0.328329 | 0.312206 | 0.681311 |
CDS Structure of MLOC_12843
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12843.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g52650.1 |
+1 |
9e-146 |
421 |
214/260 (82%) |
13102.m06002 protein chlorophyll A-B binding protein, putative, expressed |
TAIR PP10 |
AT1G45474.2 |
+1 |
2e-112 |
335 |
162/210 (77%) |
| Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256 |