MLOC_12843 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.255172.352063.576892.6833
LEAShoots from the seedlings (10 cm shoot stage)40.607382.735390.005160.4049
INF1Young developing inflorescences (5mm)0.4778460.5889240.4056230.426724
INF2Developing inflorescences (1-1.5 cm)0.2012760.2081460.1109570.195084
ROORoots from the seedlings (10 cm shoot stage)0.308602000.055904
NODDeveloping tillers at six leaf stage, 3rd internode16.185713.113216.911444.2509
CAR5Developing grain, bracts removed (5 DPA)5.860176.175696.372166.17108
CAR15Developing grain, bracts removed (15 DPA)0.2539780.3283290.3122060.681311



CDS Structure of MLOC_12843






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12843.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370255NoneNoneNoneNone
MLOC_12843.2CUST_1227_PI427708080AvailableAvailablecontig_1564232 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g52650.1 +1 9e-146 421 214/260 (82%) 13102.m06002 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT1G45474.2 +1 2e-112 335 162/210 (77%) | Symbols: LHCA5 | photosystem I light harvesting complex gene 5 | chr1:17179353-17180439 FORWARD LENGTH=256