MLOC_12841 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.303451.380361.004391.09385
LEAShoots from the seedlings (10 cm shoot stage)2.529681.193730.31131.11692
INF1Young developing inflorescences (5mm)4.588985.011987.154313.65573
INF2Developing inflorescences (1-1.5 cm)6.086336.47586.28125.72679
ROORoots from the seedlings (10 cm shoot stage)0.1282960.9283880.2629570.714583
NODDeveloping tillers at six leaf stage, 3rd internode0.3536290.4254930.4854111.27077
CAR5Developing grain, bracts removed (5 DPA)1.219470.777971.455330.895608
CAR15Developing grain, bracts removed (15 DPA)0.4111690.2508620.2414340.666303



CDS Structure of MLOC_12841






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12841.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12841.1CUST_1929_PI427708083AvailableAvailablecontig_1564226 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g41490.1 -3 4e-102 329 188/223 (84%) 13104.m04071 protein DNA-directed RNA polymerase III subunit RPC1, putative, expressed
TAIR PP10 AT5G60040.1 -3 4e-49 178 120/220 (55%) | Symbols: NRPC1 | nuclear RNA polymerase C1 | chr5:24173590-24183269 FORWARD LENGTH=1376