MLOC_12827 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.788116.027615.544118.2327
LEAShoots from the seedlings (10 cm shoot stage)6.339861.783131.302842.85366
INF1Young developing inflorescences (5mm)47.911245.619546.459843.7514
INF2Developing inflorescences (1-1.5 cm)29.976143.382337.487447.7348
ROORoots from the seedlings (10 cm shoot stage)3.979699.0976711.142112.5427
NODDeveloping tillers at six leaf stage, 3rd internode0.0457690.09622590.2657990.477589
CAR5Developing grain, bracts removed (5 DPA)11.985813.331712.481914.6117
CAR15Developing grain, bracts removed (15 DPA)0.8275520.1579161.389581.82674



CDS Structure of MLOC_12827






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12827.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364578NoneNoneNoneNone
MLOC_12827.3CUST_1224_PI427708080AvailableAvailablecontig_1564189 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g10020.1 +3 4e-171 493 285/369 (77%) 13102.m01106 protein Mad3/BUB1 homology region 1 domain containing protein, expressed
TAIR PP10 AT2G33560.1 +3 1e-101 314 174/325 (54%) | Symbols: BUBR1 | BUB1-related (BUB1: budding uninhibited by benzymidazol 1) | chr2:14213810-14215918 REVERSE LENGTH=395