- Predicted Gene MLOC_12819
MLOC_12819 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_12819_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 39.5332 | 42.1587 | 39.5711 | 44.9821 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 35.5978 | 19.1298 | 19.6923 | 23.1056 |
INF1 | Young developing inflorescences (5mm) | 68.173 | 71.2867 | 79.3251 | 63.9775 |
INF2 | Developing inflorescences (1-1.5 cm) | 84.479 | 94.7991 | 84.1807 | 102.804 |
ROO | Roots from the seedlings (10 cm shoot stage) | 15.4382 | 35.2107 | 33.4069 | 44.5821 |
NOD | Developing tillers at six leaf stage, 3rd internode | 55.6129 | 62.1704 | 41.5486 | 214.47 |
CAR5 | Developing grain, bracts removed (5 DPA) | 44.9428 | 47.6172 | 45.8938 | 48.789 |
CAR15 | Developing grain, bracts removed (15 DPA) | 17.7623 | 17.3256 | 17.1589 | 42.3065 |
CDS Structure of MLOC_12819
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12819.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os03g52780.1 |
+3 |
0.0 |
623 |
333/416 (80%) |
13103.m05757 protein expressed protein |
TAIR PP10 |
AT2G15860.1 |
+3 |
3e-139 |
416 |
222/406 (55%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:6905712-6909282 REVERSE LENGTH=512 |