MLOC_12819 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.533242.158739.571144.9821
LEAShoots from the seedlings (10 cm shoot stage)35.597819.129819.692323.1056
INF1Young developing inflorescences (5mm)68.17371.286779.325163.9775
INF2Developing inflorescences (1-1.5 cm)84.47994.799184.1807102.804
ROORoots from the seedlings (10 cm shoot stage)15.438235.210733.406944.5821
NODDeveloping tillers at six leaf stage, 3rd internode55.612962.170441.5486214.47
CAR5Developing grain, bracts removed (5 DPA)44.942847.617245.893848.789
CAR15Developing grain, bracts removed (15 DPA)17.762317.325617.158942.3065



CDS Structure of MLOC_12819






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12819.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12819.1CUST_8987_PI427708080AvailableAvailablecontig_1564170 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52780.1 +3 0.0 623 333/416 (80%) 13103.m05757 protein expressed protein
TAIR PP10 AT2G15860.1 +3 3e-139 416 222/406 (55%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:6905712-6909282 REVERSE LENGTH=512