MLOC_12815 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains59.896647.768154.432547.9501
LEAShoots from the seedlings (10 cm shoot stage)33.094526.960231.679623.2201
INF1Young developing inflorescences (5mm)39.589638.612931.681129.0832
INF2Developing inflorescences (1-1.5 cm)30.539732.842732.078131.9691
ROORoots from the seedlings (10 cm shoot stage)76.802573.064467.385772.8547
NODDeveloping tillers at six leaf stage, 3rd internode51.910245.871432.3394121.972
CAR5Developing grain, bracts removed (5 DPA)41.961841.288737.984835.4681
CAR15Developing grain, bracts removed (15 DPA)61.183175.412157.0741144.734



CDS Structure of MLOC_12815






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12815.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251517.1NoneNoneNoneNone
MLOC_12815.1CUST_1221_PI427708080AvailableAvailablecontig_1564161 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g43470.1 -1 2e-176 500 250/272 (92%) 13108.m04710 protein ER lumen protein retaining receptor, putative, expressed
TAIR PP10 AT1G75760.1 -1 8e-163 465 227/272 (83%) ER lumen protein retaining receptor family protein | chr1:28446940-28448421 REVERSE LENGTH=272