MLOC_12809 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.805076.79857.072086.46681
LEAShoots from the seedlings (10 cm shoot stage)4.960921.036691.865332.03813
INF1Young developing inflorescences (5mm)4.727844.303963.493673.60948
INF2Developing inflorescences (1-1.5 cm)2.494413.29923.750593.4626
ROORoots from the seedlings (10 cm shoot stage)2.281842.263155.6632.69947
NODDeveloping tillers at six leaf stage, 3rd internode12.04239.460756.1046921.6074
CAR5Developing grain, bracts removed (5 DPA)20.385622.838118.378919.9643
CAR15Developing grain, bracts removed (15 DPA)000.02393710.0452675



CDS Structure of MLOC_12809






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12809.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356389NoneNoneNoneNone
MLOC_12809.1CUST_1219_PI427708080AvailableAvailablecontig_1564143 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g10850.1 +2 1e-165 484 246/304 (81%) 13101.m01171 protein peroxidase precursor, putative, expressed
TAIR PP10 AT5G05340.1 +2 2e-104 325 171/306 (56%) Peroxidase superfamily protein | chr5:1579142-1580819 REVERSE LENGTH=324