MLOC_12729 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.23332.244134.247728.176
LEAShoots from the seedlings (10 cm shoot stage)26.510920.323312.488216.8322
INF1Young developing inflorescences (5mm)31.236530.459727.953623.6654
INF2Developing inflorescences (1-1.5 cm)28.419425.486627.285327.2795
ROORoots from the seedlings (10 cm shoot stage)9.2366817.435618.512719.0198
NODDeveloping tillers at six leaf stage, 3rd internode13.477111.935310.234440.0742
CAR5Developing grain, bracts removed (5 DPA)55.6154.92156.214649.4472
CAR15Developing grain, bracts removed (15 DPA)31.338528.810438.238965.5722



CDS Structure of MLOC_12729






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12729.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376107NoneNoneNoneNone
MLOC_12729.2CUST_1208_PI427708080AvailableAvailablecontig_1563965 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g33420.1 -2 0.0 1030 494/650 (76%) 13101.m03369 protein glycosyl hydrolase family protein 27, putative, expressed
TAIR PP10 AT3G26380.1 -2 0.0 704 337/622 (54%) Melibiase family protein | chr3:9660140-9663145 FORWARD LENGTH=647