MLOC_12718 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.045414.309211.080312.8977
LEAShoots from the seedlings (10 cm shoot stage)6.015382.498192.176993.0535
INF1Young developing inflorescences (5mm)43.783949.192447.137139.0046
INF2Developing inflorescences (1-1.5 cm)36.268144.088534.043142.1844
ROORoots from the seedlings (10 cm shoot stage)8.1855610.817510.394712.2481
NODDeveloping tillers at six leaf stage, 3rd internode0.6540271.319864.727925.85845
CAR5Developing grain, bracts removed (5 DPA)15.057315.398116.102614.7998
CAR15Developing grain, bracts removed (15 DPA)2.565532.052832.476835.35243



CDS Structure of MLOC_12718






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12718.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368316NoneNoneNoneNone
MLOC_12718.1CUST_1207_PI427708080AvailableAvailablecontig_1563936 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g17950.1 -2 0.0 850 563/650 (87%) 13103.m02147 protein expressed protein
TAIR PP10 AT1G07970.1 -2 6e-163 494 310/573 (54%) CONTAINS InterPro DOMAIN/s: Cytochrome B561-related, N-terminal (InterPro:IPR019176); Has 215 Blast hits to 213 proteins in 79 species: Archae - 0; Bacteria - 6; Metazoa - 131; Fungi - 22; Plants - 42; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | chr1:2469528-2472518 REVERSE LENGTH=693