MLOC_12686 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.623814.313117.209915.8478
LEAShoots from the seedlings (10 cm shoot stage)3.627791.0291.73771.71043
INF1Young developing inflorescences (5mm)13.222617.811217.834415.1291
INF2Developing inflorescences (1-1.5 cm)14.052417.776915.489718.8782
ROORoots from the seedlings (10 cm shoot stage)14.551312.228614.629714.3231
NODDeveloping tillers at six leaf stage, 3rd internode14.418616.454212.576440.994
CAR5Developing grain, bracts removed (5 DPA)0.6335921.317081.27471.16263
CAR15Developing grain, bracts removed (15 DPA)0.5249950.2224920.5394531.0633



CDS Structure of MLOC_12686






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12686.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371674NoneNoneNoneNone
MLOC_12686.1CUST_1200_PI427708080AvailableAvailablecontig_1563877 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g12610.1 +1 0.0 864 475/549 (87%) 13106.m01381 protein auxin efflux carrier component, putative, expressed
TAIR PP10 AT1G73590.1 +1 0.0 676 372/578 (64%) | Symbols: PIN1, ATPIN1 | Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622