MLOC_12633 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.921214.632312.674710.3373
LEAShoots from the seedlings (10 cm shoot stage)15.227912.782912.14669.15442
INF1Young developing inflorescences (5mm)13.644416.044118.05969.45817
INF2Developing inflorescences (1-1.5 cm)15.013815.260115.792812.7637
ROORoots from the seedlings (10 cm shoot stage)8.6263311.212211.04139.65104
NODDeveloping tillers at six leaf stage, 3rd internode12.868414.077616.546139.5735
CAR5Developing grain, bracts removed (5 DPA)11.0411.879312.45248.3209
CAR15Developing grain, bracts removed (15 DPA)6.431267.292216.4382710.7764



CDS Structure of MLOC_12633






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12633.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12633.2NoneAvailableAvailablecontig_1563758 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g27890.3 -3 6e-81 262 127/151 (84%) 13106.m02871 protein STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
TAIR PP10 AT5G40440.1 -3 4e-47 172 82/148 (55%) | Symbols: ATMKK3, MKK3 | mitogen-activated protein kinase kinase 3 | chr5:16182149-16184513 FORWARD LENGTH=520