MLOC_12615 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.099543.786745.669942.2196
LEAShoots from the seedlings (10 cm shoot stage)35.644723.6823.285322.9826
INF1Young developing inflorescences (5mm)26.002920.0221.318618.832
INF2Developing inflorescences (1-1.5 cm)16.441717.352718.813618.8185
ROORoots from the seedlings (10 cm shoot stage)28.691230.778530.608934.5709
NODDeveloping tillers at six leaf stage, 3rd internode21.536917.54816.043257.0291
CAR5Developing grain, bracts removed (5 DPA)39.588941.010542.140739.1229
CAR15Developing grain, bracts removed (15 DPA)16.772217.194215.149237.8825



CDS Structure of MLOC_12615






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12615.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364298NoneNoneNoneNone
MLOC_12615.1CUST_1191_PI427708080AvailableAvailablecontig_1563724 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g33720.1 -3 0.0 651 350/396 (88%) 13108.m03518 protein lactate/malate dehydrogenase, putative, expressed
TAIR PP10 AT3G47520.1 -3 0.0 542 280/346 (81%) | Symbols: MDH | malate dehydrogenase | chr3:17513657-17514868 FORWARD LENGTH=403