MLOC_12602 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.792820.161115.236519.3229
LEAShoots from the seedlings (10 cm shoot stage)5.680981.436841.211842.60457
INF1Young developing inflorescences (5mm)62.337162.05556.223954.4089
INF2Developing inflorescences (1-1.5 cm)35.12644.488133.702246.1562
ROORoots from the seedlings (10 cm shoot stage)3.9117111.48869.8855814.4862
NODDeveloping tillers at six leaf stage, 3rd internode1.976070.9524940.8274323.7037
CAR5Developing grain, bracts removed (5 DPA)15.039714.119113.783715.2081
CAR15Developing grain, bracts removed (15 DPA)0.8901140.2622280.8614191.58176



CDS Structure of MLOC_12602






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12602.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12602.1CUST_8953_PI427708080AvailableAvailablecontig_1563686 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g52360.1 +1 0.0 610 308/371 (83%) 13102.m05966 protein peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed
TAIR PP10 AT2G15790.1 +1 1e-175 503 245/356 (69%) | Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361