- Predicted Gene MLOC_12602
MLOC_12602 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 13.7928 | 20.1611 | 15.2365 | 19.3229 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 5.68098 | 1.43684 | 1.21184 | 2.60457 |
| INF1 | Young developing inflorescences (5mm) | 62.3371 | 62.055 | 56.2239 | 54.4089 |
| INF2 | Developing inflorescences (1-1.5 cm) | 35.126 | 44.4881 | 33.7022 | 46.1562 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 3.91171 | 11.4886 | 9.88558 | 14.4862 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 1.97607 | 0.952494 | 0.827432 | 3.7037 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 15.0397 | 14.1191 | 13.7837 | 15.2081 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.890114 | 0.262228 | 0.861419 | 1.58176 |
CDS Structure of MLOC_12602
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12602.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g52360.1 |
+1 |
0.0 |
610 |
308/371 (83%) |
13102.m05966 protein peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed |
| TAIR PP10 |
AT2G15790.1 |
+1 |
1e-175 |
503 |
245/356 (69%) |
| Symbols: SQN, CYP40 | peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase | chr2:6878144-6880743 REVERSE LENGTH=361 |