MLOC_12581 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains397.748263.602298.112267.081
LEAShoots from the seedlings (10 cm shoot stage)155.086206.93991.4966107.947
INF1Young developing inflorescences (5mm)1.124180.08541930.09550350.380009
INF2Developing inflorescences (1-1.5 cm)0.1124820.1764620.0937980.136324
ROORoots from the seedlings (10 cm shoot stage)1080.91996.8351220.62971.956
NODDeveloping tillers at six leaf stage, 3rd internode1.340064.91715.226512.104
CAR5Developing grain, bracts removed (5 DPA)0.1401910.174660.09310380.1188
CAR15Developing grain, bracts removed (15 DPA)00.2759390.101350.453594



CDS Structure of MLOC_12581






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12581.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252379.1NoneNoneNoneNone
MLOC_12581.1CUST_1188_PI427708080AvailableAvailablecontig_1563645 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g11500.1 -2 1e-92 283 136/178 (76%) 13110.m01042 protein SCP-like extracellular protein, expressed
TAIR PP10 AT4G33720.1 -2 1e-55 185 87/161 (54%) CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein | chr4:16182813-16183304 FORWARD LENGTH=163