MLOC_12573 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.07043390.2857390.1271230.185575
LEAShoots from the seedlings (10 cm shoot stage)0.3536370.4885950.7378220.419899
INF1Young developing inflorescences (5mm)0.5104730.4598580.4445130.389357
INF2Developing inflorescences (1-1.5 cm)0.2239230.4012870.2304070.314239
ROORoots from the seedlings (10 cm shoot stage)0.4193470.1658840.09350080.227346
NODDeveloping tillers at six leaf stage, 3rd internode0.4640410.6043560.5958311.67697
CAR5Developing grain, bracts removed (5 DPA)1.439731.135541.561261.22206
CAR15Developing grain, bracts removed (15 DPA)0.1406880.0301910.08215070.216209



CDS Structure of MLOC_12573






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12573.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12573.3CUST_1899_PI427708083AvailableAvailablecontig_1563617 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g36740.1 -3 7e-40 138 63/84 (75%) 13104.m03553 protein potassium channel SKOR, putative, expressed
TAIR PP10 AT5G37500.1 -3 2e-29 114 54/85 (64%) | Symbols: GORK | gated outwardly-rectifying K+ channel | chr5:14889758-14894883 REVERSE LENGTH=820