MLOC_12558 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.241566.25236.807515.93119
LEAShoots from the seedlings (10 cm shoot stage)5.844176.695216.161784.33659
INF1Young developing inflorescences (5mm)2.066653.813283.840242.30756
INF2Developing inflorescences (1-1.5 cm)2.282722.356921.877422.16973
ROORoots from the seedlings (10 cm shoot stage)12.80358.339387.903878.65817
NODDeveloping tillers at six leaf stage, 3rd internode7.142737.534068.3951620.0827
CAR5Developing grain, bracts removed (5 DPA)3.103084.80233.627043.28585
CAR15Developing grain, bracts removed (15 DPA)1.51081.155382.104783.31614



CDS Structure of MLOC_12558






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12558.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372038NoneNoneNoneNone
MLOC_12558.1CUST_1185_PI427708080AvailableAvailablecontig_1563557 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g39960.1 +1 1e-127 377 232/281 (83%) 13108.m04269 protein 3-oxoacyl-reductase, chloroplast precursor, putative, expressed
TAIR PP10 AT1G63380.1 +1 2e-88 276 161/270 (60%) NAD(P)-binding Rossmann-fold superfamily protein | chr1:23505582-23506504 FORWARD LENGTH=282