MLOC_12555 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.415133.294532.663583.16117
LEAShoots from the seedlings (10 cm shoot stage)3.855452.465931.702132.43191
INF1Young developing inflorescences (5mm)6.144356.205067.807845.83594
INF2Developing inflorescences (1-1.5 cm)9.879910.563311.258311.902
ROORoots from the seedlings (10 cm shoot stage)1.292892.214521.580342.71138
NODDeveloping tillers at six leaf stage, 3rd internode2.732064.657784.2071916.9659
CAR5Developing grain, bracts removed (5 DPA)8.013288.583469.793188.90171
CAR15Developing grain, bracts removed (15 DPA)4.909964.932564.3872111.3321



CDS Structure of MLOC_12555






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12555.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372588NoneNoneNoneNone
MLOC_12555.1CUST_1184_PI427708080AvailableAvailablecontig_1563554 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g02464.1 -1 0.0 1214 585/708 (83%) 13111.m00177 protein vacuolar-sorting receptor precursor, putative, expressed
TAIR PP10 AT3G52850.1 -1 0.0 1004 456/606 (75%) | Symbols: VSR1, BP-80, ATELP, BP80, BP80B, ATELP1, ATVSR1, GFS1, VSR1;1, BP80-1;1 | vacuolar sorting receptor homolog 1 | chr3:19587999-19591690 FORWARD LENGTH=623