MLOC_12553 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains229.762178.035195.583219.317
LEAShoots from the seedlings (10 cm shoot stage)427.476395.655398.045376.918
INF1Young developing inflorescences (5mm)11.3084.984314.811366.57125
INF2Developing inflorescences (1-1.5 cm)5.328736.632838.754078.51414
ROORoots from the seedlings (10 cm shoot stage)463.544423.06349.573581.562
NODDeveloping tillers at six leaf stage, 3rd internode438.271361.116435.5851279.75
CAR5Developing grain, bracts removed (5 DPA)65.390962.49257.994572.6092
CAR15Developing grain, bracts removed (15 DPA)9.070779.08467.3917922.8503



CDS Structure of MLOC_12553






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12553.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248304.1NoneNoneNoneNone
MLOC_12553.1CUST_1183_PI427708080AvailableAvailablecontig_1563552 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g13210.2 +1 6e-30 117 99/124 (80%) 13101.m01452 protein salt stress root protein RS1, putative, expressed
TAIR PP10None-----