MLOC_12547 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8401360.7095190.7702280.745194
LEAShoots from the seedlings (10 cm shoot stage)0.1533870.0793540.1917350.125849
INF1Young developing inflorescences (5mm)0.04234620.0862570.2680560.100872
INF2Developing inflorescences (1-1.5 cm)0.2327460.187170.08913380.194498
ROORoots from the seedlings (10 cm shoot stage)0.5543670.3529450.5772480.505453
NODDeveloping tillers at six leaf stage, 3rd internode0.07858610.04720760.02338690.152559
CAR5Developing grain, bracts removed (5 DPA)0.03823420.06955750.0868350.0637812
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_12547






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12547.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12547.2CUST_8947_PI427708080AvailableAvailablecontig_1563539 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g43870.1 +2 3e-77 244 139/226 (62%) 13108.m04752 protein carrier, putative
TAIR PP10 AT2G17080.1 +2 3e-15 76 66/250 (26%) Arabidopsis protein of unknown function (DUF241) | chr2:7433326-7434117 REVERSE LENGTH=263