MLOC_12539 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.2742190.5851260.4932650.465412
CAR15Developing grain, bracts removed (15 DPA)0.3619520.2866450.1343580.73193



CDS Structure of MLOC_12539






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12539.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12539.2CUST_1897_PI427708083AvailableAvailablecontig_1563509 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g05730.1 +1 2e-130 390 189/199 (95%) 13103.m00618 protein cell division control protein 48 homolog E, putative, expressed
TAIR PP10 AT5G03340.1 +1 4e-127 381 185/199 (93%) ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810