MLOC_12522 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.109866.950456.716077.73343
LEAShoots from the seedlings (10 cm shoot stage)8.451449.64619.686088.17164
INF1Young developing inflorescences (5mm)3.803985.382066.39044.673
INF2Developing inflorescences (1-1.5 cm)3.036933.934673.534034.09537
ROORoots from the seedlings (10 cm shoot stage)7.463678.426289.9515610.8869
NODDeveloping tillers at six leaf stage, 3rd internode5.094166.953339.7754323.7049
CAR5Developing grain, bracts removed (5 DPA)7.698177.868588.29448.32875
CAR15Developing grain, bracts removed (15 DPA)11.438111.186810.434428.3156



CDS Structure of MLOC_12522






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12522.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368314NoneNoneNoneNone
MLOC_12522.2CUST_1179_PI427708080AvailableAvailablecontig_1563464 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g15850.1 -2 2e-103 308 157/202 (78%) 13103.m01863 protein josephin, putative, expressed
TAIR PP10 AT2G29640.1 -2 2e-65 215 98/162 (60%) | Symbols: JOSL | JOSEPHIN-like protein | chr2:12671206-12673300 FORWARD LENGTH=360