MLOC_12497 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.672212.929114.779914.5096
LEAShoots from the seedlings (10 cm shoot stage)9.12988.6025113.40027.69797
INF1Young developing inflorescences (5mm)17.990320.119223.705613.713
INF2Developing inflorescences (1-1.5 cm)14.410314.901317.213513.8887
ROORoots from the seedlings (10 cm shoot stage)14.272415.840916.520116.0028
NODDeveloping tillers at six leaf stage, 3rd internode5.923567.2810210.009321.9167
CAR5Developing grain, bracts removed (5 DPA)13.846615.264117.109512.168
CAR15Developing grain, bracts removed (15 DPA)4.201464.198354.650227.77759



CDS Structure of MLOC_12497






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12497.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12497.2CUST_11365_PI427708083AvailableAvailablecontig_1563417 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g46130.1 -3 4e-40 155 75/84 (89%) 13102.m05175 protein tRNA synthetases class II domain containing protein, expressed
TAIR PP10 AT4G31180.2 -3 2e-35 140 66/84 (79%) Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15156696-15159362 FORWARD LENGTH=558