MLOC_12496 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1671580.2608640.2637030.244412
LEAShoots from the seedlings (10 cm shoot stage)2.243160.3467121.742161.2769
INF1Young developing inflorescences (5mm)0.065134300.08153810.0800044
INF2Developing inflorescences (1-1.5 cm)0.03117990.029486400.0435067
ROORoots from the seedlings (10 cm shoot stage)000.1107050.0428564
NODDeveloping tillers at six leaf stage, 3rd internode0.02842370.010845200.0537217
CAR5Developing grain, bracts removed (5 DPA)0.9526541.488931.255531.25844
CAR15Developing grain, bracts removed (15 DPA)0.4678320.6304430.8279811.46193



CDS Structure of MLOC_12496






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12496.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12496.1CUST_1890_PI427708083AvailableAvailablecontig_1563410 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g62880.1 +3 1e-125 319 157/217 (72%) 13101.m06746 protein oxidoreductase, aldo/keto reductase family protein, putative, expressed
TAIR PP10 AT2G37770.2 +3 2e-93 246 126/225 (56%) NAD(P)-linked oxidoreductase superfamily protein | chr2:15834888-15836659 FORWARD LENGTH=315