MLOC_12482 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.398427.791330.200828.7939
LEAShoots from the seedlings (10 cm shoot stage)38.583844.220267.292341.1945
INF1Young developing inflorescences (5mm)1.948442.002091.727941.61151
INF2Developing inflorescences (1-1.5 cm)0.8031831.103290.928351.03287
ROORoots from the seedlings (10 cm shoot stage)34.77630.585430.039235.385
NODDeveloping tillers at six leaf stage, 3rd internode12.660919.852413.71353.6498
CAR5Developing grain, bracts removed (5 DPA)3.515313.811444.307143.65954
CAR15Developing grain, bracts removed (15 DPA)2.240371.81651.567954.46503



CDS Structure of MLOC_12482






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12482.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369033NoneNoneNoneNone
MLOC_12482.3CUST_1176_PI427708080AvailableAvailablecontig_1563389 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g33310.1 -1 0.0 543 287/334 (86%) 13105.m03442 protein oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
TAIR PP10 AT4G02940.1 -1 2e-108 350 193/358 (54%) oxidoreductase, 2OG-Fe(II) oxygenase family protein | chr4:1306658-1310699 FORWARD LENGTH=569