MLOC_12479 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5317880.4074560.6483590.525261
LEAShoots from the seedlings (10 cm shoot stage)0.4291990.036026100.194131
INF1Young developing inflorescences (5mm)19.213320.378221.237818.8995
INF2Developing inflorescences (1-1.5 cm)8.800828.16926.699849.45223
ROORoots from the seedlings (10 cm shoot stage)1.198211.916211.730732.14073
NODDeveloping tillers at six leaf stage, 3rd internode1.321690.9248161.137192.53328
CAR5Developing grain, bracts removed (5 DPA)1.185041.377141.018411.27799
CAR15Developing grain, bracts removed (15 DPA)0.3686750.2990480.4289820.931591



CDS Structure of MLOC_12479






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12479.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12479.1CUST_1884_PI427708083AvailableAvailablecontig_1563385 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g08120.1 +1 5e-177 525 343/580 (59%) 13106.m00849 protein plant protein of unknown function domain containing protein, expressed
TAIR PP10 AT3G02645.1 +1 9e-93 303 204/543 (38%) Plant protein of unknown function (DUF247) | chr3:566271-567860 FORWARD LENGTH=529