MLOC_12452 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.565343.12122.877663.1861
LEAShoots from the seedlings (10 cm shoot stage)3.65774.171782.666523.29989
INF1Young developing inflorescences (5mm)7.262348.055339.510527.56061
INF2Developing inflorescences (1-1.5 cm)12.22210.608211.793413.4614
ROORoots from the seedlings (10 cm shoot stage)0.1880721.068641.610641.42051
NODDeveloping tillers at six leaf stage, 3rd internode2.4282.724252.853511.0064
CAR5Developing grain, bracts removed (5 DPA)3.462884.193984.797044.45741
CAR15Developing grain, bracts removed (15 DPA)2.131271.627612.485034.88293



CDS Structure of MLOC_12452






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12452.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12452.2CUST_8934_PI427708080AvailableAvailablecontig_1563320 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g51150.1 -3 0.0 692 372/505 (74%) 13105.m05505 protein RNA polymerase sigma factor, putative, expressed
TAIR PP10 AT3G53920.1 -3 7e-76 258 162/441 (37%) | Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C | chr3:19961041-19963820 REVERSE LENGTH=571