- Predicted Gene MLOC_12452
MLOC_12452 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_12452_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_12452_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 2.56534 | 3.1212 | 2.87766 | 3.1861 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 3.6577 | 4.17178 | 2.66652 | 3.29989 |
INF1 | Young developing inflorescences (5mm) | 7.26234 | 8.05533 | 9.51052 | 7.56061 |
INF2 | Developing inflorescences (1-1.5 cm) | 12.222 | 10.6082 | 11.7934 | 13.4614 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.188072 | 1.06864 | 1.61064 | 1.42051 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.428 | 2.72425 | 2.8535 | 11.0064 |
CAR5 | Developing grain, bracts removed (5 DPA) | 3.46288 | 4.19398 | 4.79704 | 4.45741 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.13127 | 1.62761 | 2.48503 | 4.88293 |
CDS Structure of MLOC_12452
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12452.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os05g51150.1 |
-3 |
0.0 |
692 |
372/505 (74%) |
13105.m05505 protein RNA polymerase sigma factor, putative, expressed |
TAIR PP10 |
AT3G53920.1 |
-3 |
7e-76 |
258 |
162/441 (37%) |
| Symbols: SIGC, SIG3 | RNApolymerase sigma-subunit C | chr3:19961041-19963820 REVERSE LENGTH=571 |