MLOC_12438 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains39.889340.660636.999341.6896
LEAShoots from the seedlings (10 cm shoot stage)34.971271.701171.006849.7316
INF1Young developing inflorescences (5mm)19.985321.666228.147720.8431
INF2Developing inflorescences (1-1.5 cm)19.377919.434717.394122.0836
ROORoots from the seedlings (10 cm shoot stage)40.43727.876818.77333.8405
NODDeveloping tillers at six leaf stage, 3rd internode72.395662.7004126.544225.84
CAR5Developing grain, bracts removed (5 DPA)10.821910.830311.670811.5738
CAR15Developing grain, bracts removed (15 DPA)6.26525.056645.6513114.4161



CDS Structure of MLOC_12438






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12438.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK362434NoneNoneNoneNone
MLOC_12438.2CUST_1170_PI427708080AvailableAvailablecontig_1563292 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g51410.1 -1 3e-159 459 257/309 (83%) 13102.m05845 protein shikimate kinase, putative, expressed
TAIR PP10 AT2G21940.4 -1 1e-79 254 138/266 (52%) | Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=304