- Predicted Gene MLOC_12438
MLOC_12438 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 39.8893 | 40.6606 | 36.9993 | 41.6896 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 34.9712 | 71.7011 | 71.0068 | 49.7316 |
| INF1 | Young developing inflorescences (5mm) | 19.9853 | 21.6662 | 28.1477 | 20.8431 |
| INF2 | Developing inflorescences (1-1.5 cm) | 19.3779 | 19.4347 | 17.3941 | 22.0836 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 40.437 | 27.8768 | 18.773 | 33.8405 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 72.3956 | 62.7004 | 126.544 | 225.84 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 10.8219 | 10.8303 | 11.6708 | 11.5738 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 6.2652 | 5.05664 | 5.65131 | 14.4161 |
CDS Structure of MLOC_12438
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12438.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os02g51410.1 |
-1 |
3e-159 |
459 |
257/309 (83%) |
13102.m05845 protein shikimate kinase, putative, expressed |
| TAIR PP10 |
AT2G21940.4 |
-1 |
1e-79 |
254 |
138/266 (52%) |
| Symbols: SK1, ATSK1 | shikimate kinase 1 | chr2:9351106-9352881 FORWARD LENGTH=304 |