MLOC_12419 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.37938.337969.5668811.0685
LEAShoots from the seedlings (10 cm shoot stage)39.323279.925377.001858.4445
INF1Young developing inflorescences (5mm)6.317697.032287.945586.66112
INF2Developing inflorescences (1-1.5 cm)4.120454.781944.955035.56024
ROORoots from the seedlings (10 cm shoot stage)7.138819.770269.5735912.2727
NODDeveloping tillers at six leaf stage, 3rd internode19.215820.112824.113361.5594
CAR5Developing grain, bracts removed (5 DPA)7.079469.450218.721819.41567
CAR15Developing grain, bracts removed (15 DPA)3.366314.114872.810039.4218



CDS Structure of MLOC_12419






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12419.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370008NoneNoneNoneNone
MLOC_12419.1CUST_1169_PI427708080AvailableAvailablecontig_1563249 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g64270.1 +1 4e-63 211 125/197 (63%) 13101.m06918 protein expressed protein
TAIR PP10 AT2G36145.1 +1 3e-45 160 81/128 (63%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15168571-15169373 FORWARD LENGTH=186