- Predicted Gene MLOC_12419
MLOC_12419 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_12419_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_12419_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 12.3793 | 8.33796 | 9.56688 | 11.0685 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 39.3232 | 79.9253 | 77.0018 | 58.4445 |
INF1 | Young developing inflorescences (5mm) | 6.31769 | 7.03228 | 7.94558 | 6.66112 |
INF2 | Developing inflorescences (1-1.5 cm) | 4.12045 | 4.78194 | 4.95503 | 5.56024 |
ROO | Roots from the seedlings (10 cm shoot stage) | 7.13881 | 9.77026 | 9.57359 | 12.2727 |
NOD | Developing tillers at six leaf stage, 3rd internode | 19.2158 | 20.1128 | 24.1133 | 61.5594 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.07946 | 9.45021 | 8.72181 | 9.41567 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.36631 | 4.11487 | 2.81003 | 9.4218 |
CDS Structure of MLOC_12419
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12419.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g64270.1 |
+1 |
4e-63 |
211 |
125/197 (63%) |
13101.m06918 protein expressed protein |
TAIR PP10 |
AT2G36145.1 |
+1 |
3e-45 |
160 |
81/128 (63%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:15168571-15169373 FORWARD LENGTH=186 |