MLOC_12403 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.964210.737710.997411.426
LEAShoots from the seedlings (10 cm shoot stage)3.474883.385315.608423.49255
INF1Young developing inflorescences (5mm)15.083711.933512.796511.4913
INF2Developing inflorescences (1-1.5 cm)6.561726.778046.475947.2996
ROORoots from the seedlings (10 cm shoot stage)4.7547811.91329.1277912.668
NODDeveloping tillers at six leaf stage, 3rd internode0.382070.461241.411241.90229
CAR5Developing grain, bracts removed (5 DPA)8.048347.874699.477188.37912
CAR15Developing grain, bracts removed (15 DPA)2.514892.446142.342845.74839



CDS Structure of MLOC_12403






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12403.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372996NoneNoneNoneNone
MLOC_12403.1CUST_1167_PI427708080AvailableAvailablecontig_1563217 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g16870.1 -2 2e-154 444 237/295 (80%) 13103.m02007 protein expressed protein
TAIR PP10 AT3G04020.1 -2 2e-75 241 127/296 (43%) unknown protein; Has 26 Blast hits to 25 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr3:1040548-1042377 FORWARD LENGTH=304