MLOC_12353 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.124063.359443.396724.73375
LEAShoots from the seedlings (10 cm shoot stage)1.207010.2848240.2288950.482946
INF1Young developing inflorescences (5mm)12.485916.911518.530416.8039
INF2Developing inflorescences (1-1.5 cm)11.404415.476812.027218.3405
ROORoots from the seedlings (10 cm shoot stage)3.894813.601112.916255.07477
NODDeveloping tillers at six leaf stage, 3rd internode0.1277990.2305930.1263890.670272
CAR5Developing grain, bracts removed (5 DPA)4.524474.491053.725065.36725
CAR15Developing grain, bracts removed (15 DPA)0.8655840.5614890.7642852.01864



CDS Structure of MLOC_12353






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12353.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373260NoneNoneNoneNone
MLOC_12353.3CUST_1161_PI427708080AvailableAvailablecontig_1563096 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53970.1 +2 1e-90 280 208/325 (64%) 13103.m05911 protein expressed protein
TAIR PP10 AT4G17240.1 +2 2e-44 160 105/245 (43%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). | chr4:9666799-9668292 REVERSE LENGTH=343