MLOC_12333 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.598642.794952.806322.64427
LEAShoots from the seedlings (10 cm shoot stage)2.927142.275211.872741.98721
INF1Young developing inflorescences (5mm)6.9938.553018.636376.26746
INF2Developing inflorescences (1-1.5 cm)10.349311.077510.192410.9872
ROORoots from the seedlings (10 cm shoot stage)1.573423.992973.124153.96144
NODDeveloping tillers at six leaf stage, 3rd internode1.725522.419164.690259.02213
CAR5Developing grain, bracts removed (5 DPA)4.22254.449733.604263.76542
CAR15Developing grain, bracts removed (15 DPA)1.094731.625431.104462.75918



CDS Structure of MLOC_12333






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12333.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12333.3CUST_17552_PI427708080AvailableAvailablecontig_1563069 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g13850.1 -1 0.0 787 399/517 (77%) 13103.m01611 protein cell cycle checkpoint protein RAD17, putative, expressed
TAIR PP10 AT5G66130.1 -1 5e-131 402 233/518 (45%) | Symbols: ATRAD17, RAD17 | RADIATION SENSITIVE 17 | chr5:26434236-26437091 FORWARD LENGTH=599