MLOC_12328 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.164510.29679.3132610.6556
LEAShoots from the seedlings (10 cm shoot stage)7.575222.959183.211123.7322
INF1Young developing inflorescences (5mm)19.804423.392626.368919.7539
INF2Developing inflorescences (1-1.5 cm)25.543522.935329.300827.3996
ROORoots from the seedlings (10 cm shoot stage)6.526767.6700411.69588.85382
NODDeveloping tillers at six leaf stage, 3rd internode11.92328.02279.7932622.1606
CAR5Developing grain, bracts removed (5 DPA)10.1739.725910.40839.83513
CAR15Developing grain, bracts removed (15 DPA)3.298581.984833.350076.91056



CDS Structure of MLOC_12328






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12328.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12328.5CUST_1872_PI427708083AvailableAvailablecontig_1563065 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g51230.1 +1 8e-22 97 54/72 (75%) 13101.m05340 protein IQ calmodulin-binding motif domain containing protein, expressed
TAIR PP10 AT2G26180.1 +1 2e-20 93 51/72 (71%) | Symbols: IQD6 | IQ-domain 6 | chr2:11143433-11144982 REVERSE LENGTH=416