MLOC_12278 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains802.482379.495402.29377.501
LEAShoots from the seedlings (10 cm shoot stage)312.889133.456177.551138.461
INF1Young developing inflorescences (5mm)605.595705.416842.052404.749
INF2Developing inflorescences (1-1.5 cm)626.315659.722565.699499.477
ROORoots from the seedlings (10 cm shoot stage)677.646406.205411.568370.812
NODDeveloping tillers at six leaf stage, 3rd internode85.5096156.967219.585385.88
CAR5Developing grain, bracts removed (5 DPA)328.861369.143385.043239.582
CAR15Developing grain, bracts removed (15 DPA)208.208188.913203.387334.293



CDS Structure of MLOC_12278






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12278.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12278.1CUST_11358_PI427708083AvailableAvailablecontig_1562929 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08050.1 -1 2e-20 92 44/47 (94%) 13103.m30164 protein elongation factor Tu, putative, expressed
TAIR PP10 AT1G07930.2 -1 5e-20 89 42/47 (89%) GTP binding Elongation factor Tu family protein | chr1:2459014-2460458 FORWARD LENGTH=372