MLOC_12275 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.27738.001887.880487.33298
LEAShoots from the seedlings (10 cm shoot stage)6.671834.556545.995924.62387
INF1Young developing inflorescences (5mm)4.308943.671965.296313.53776
INF2Developing inflorescences (1-1.5 cm)4.081916.791616.346936.06327
ROORoots from the seedlings (10 cm shoot stage)13.244513.60288.9730114.1984
NODDeveloping tillers at six leaf stage, 3rd internode5.092236.559985.4639519.726
CAR5Developing grain, bracts removed (5 DPA)4.90234.84285.057944.56287
CAR15Developing grain, bracts removed (15 DPA)0.5803460.6454220.6199861.4164



CDS Structure of MLOC_12275






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12275.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363487NoneNoneNoneNone
MLOC_12275.2CUST_99_PI427708083AvailableAvailablecontig_1562928 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g16146.1 -2 7e-140 410 221/308 (72%) 13101.m01794 protein phenazine biosynthesis protein, putative, expressed
TAIR PP10 AT4G02860.1 -2 3e-85 269 142/300 (47%) Phenazine biosynthesis PhzC/PhzF protein | chr4:1268952-1270508 REVERSE LENGTH=313