MLOC_12233 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains62.900365.011266.311568.8527
LEAShoots from the seedlings (10 cm shoot stage)37.76845.3347610.332514.9976
INF1Young developing inflorescences (5mm)68.01773.292876.821166.2611
INF2Developing inflorescences (1-1.5 cm)56.313958.224157.140266.5823
ROORoots from the seedlings (10 cm shoot stage)44.647354.395459.595964.5277
NODDeveloping tillers at six leaf stage, 3rd internode9.488655.091460.16351712.3684
CAR5Developing grain, bracts removed (5 DPA)212.781202.311205.838214.628
CAR15Developing grain, bracts removed (15 DPA)6.124543.826446.3088913.328



CDS Structure of MLOC_12233






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12233.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371878NoneNoneNoneNone
MLOC_12233.1CUST_1148_PI427708080AvailableAvailablecontig_1562861 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g09930.1 -2 0.0 936 460/515 (89%) 13102.m01095 protein CSLA1 - cellulose synthase-like family A; mannan synthase, expressed
TAIR PP10 AT5G22740.1 -2 0.0 775 370/507 (73%) | Symbols: ATCSLA02, CSLA02, ATCSLA2, CSLA2 | cellulose synthase-like A02 | chr5:7555379-7559866 REVERSE LENGTH=534