- Predicted Gene MLOC_12212
MLOC_12212 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_12212_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_12212_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 4.24174 | 4.4278 | 4.15072 | 4.71417 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 5.48473 | 5.07954 | 5.4692 | 4.87202 |
INF1 | Young developing inflorescences (5mm) | 6.98624 | 6.13936 | 5.93248 | 5.61508 |
INF2 | Developing inflorescences (1-1.5 cm) | 7.76597 | 8.04566 | 7.41399 | 9.0008 |
ROO | Roots from the seedlings (10 cm shoot stage) | 3.80224 | 4.9518 | 3.28741 | 6.15642 |
NOD | Developing tillers at six leaf stage, 3rd internode | 2.85895 | 3.83913 | 4.58803 | 13.8822 |
CAR5 | Developing grain, bracts removed (5 DPA) | 7.42895 | 7.07431 | 8.03294 | 7.75912 |
CAR15 | Developing grain, bracts removed (15 DPA) | 5.26366 | 4.95294 | 5.28771 | 12.3828 |
CDS Structure of MLOC_12212
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12212.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os02g35860.1 |
+1 |
2e-175 |
530 |
386/658 (59%) |
13102.m03904 protein expressed protein |
TAIR PP10 |
AT1G36990.1 |
+1 |
1e-17 |
88 |
122/487 (25%) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027594-14029711 REVERSE LENGTH=581 |