MLOC_12212 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.241744.42784.150724.71417
LEAShoots from the seedlings (10 cm shoot stage)5.484735.079545.46924.87202
INF1Young developing inflorescences (5mm)6.986246.139365.932485.61508
INF2Developing inflorescences (1-1.5 cm)7.765978.045667.413999.0008
ROORoots from the seedlings (10 cm shoot stage)3.802244.95183.287416.15642
NODDeveloping tillers at six leaf stage, 3rd internode2.858953.839134.5880313.8822
CAR5Developing grain, bracts removed (5 DPA)7.428957.074318.032947.75912
CAR15Developing grain, bracts removed (15 DPA)5.263664.952945.2877112.3828



CDS Structure of MLOC_12212






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12212.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372799NoneNoneNoneNone
MLOC_12212.2CUST_1141_PI427708080AvailableAvailablecontig_1562816 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g35860.1 +1 2e-175 530 386/658 (59%) 13102.m03904 protein expressed protein
TAIR PP10 AT1G36990.1 +1 1e-17 88 122/487 (25%) unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). | chr1:14027594-14029711 REVERSE LENGTH=581