MLOC_12198 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains51.42657.853157.053342.5843
LEAShoots from the seedlings (10 cm shoot stage)44.876229.013932.746324.8181
INF1Young developing inflorescences (5mm)43.999640.361242.052225.5776
INF2Developing inflorescences (1-1.5 cm)31.645335.711732.245527.4074
ROORoots from the seedlings (10 cm shoot stage)36.906747.159342.217640.663
NODDeveloping tillers at six leaf stage, 3rd internode54.237140.915226.7276103.041
CAR5Developing grain, bracts removed (5 DPA)65.875865.263472.379247.1965
CAR15Developing grain, bracts removed (15 DPA)24.025722.739522.74437.279



CDS Structure of MLOC_12198






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12198.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12198.2NoneAvailableAvailablecontig_1562796 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g24560.1 +2 0.0 610 346/365 (95%) 13111.m02341 protein protein transport protein, putative, expressed
TAIR PP10 AT3G23660.1 +2 1e-156 485 267/362 (74%) Sec23/Sec24 protein transport family protein | chr3:8513666-8517729 REVERSE LENGTH=765