MLOC_12189 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.11493800.194315
LEAShoots from the seedlings (10 cm shoot stage)000.5190880.442126
INF1Young developing inflorescences (5mm)1.127040.4907151.105020.666797
INF2Developing inflorescences (1-1.5 cm)1.532551.047452.017591.41805
ROORoots from the seedlings (10 cm shoot stage)000.4254970.11115
NODDeveloping tillers at six leaf stage, 3rd internode00.028387300.254622
CAR5Developing grain, bracts removed (5 DPA)0.8084330.3104890.6628370.53397
CAR15Developing grain, bracts removed (15 DPA)0.2792640.2845900.772034



CDS Structure of MLOC_12189






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12189.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12189.1CUST_1858_PI427708083AvailableAvailablecontig_1562751 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g38212.1 +2 1e-53 172 82/96 (85%) 13110.m07788 protein NADPH-dependent oxidoreductase, putative
TAIR PP10 ATCG00420.1 +2 6e-37 128 62/94 (66%) | Symbols: NDHJ | NADH dehydrogenase subunit J | chrC:48677-49153 REVERSE LENGTH=158