- Predicted Gene MLOC_12188
MLOC_12188 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 66.1402 | 65.7902 | 67.0527 | 75.3553 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 66.693 | 56.8754 | 59.427 | 56.5183 |
| INF1 | Young developing inflorescences (5mm) | 53.4883 | 57.3115 | 69.1065 | 53.3579 |
| INF2 | Developing inflorescences (1-1.5 cm) | 61.2819 | 60.1045 | 64.8891 | 71.9075 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 68.9875 | 85.1155 | 71.7895 | 112.394 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 73.3454 | 97.1323 | 106.731 | 336.508 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 58.422 | 53.5745 | 58.8779 | 60.1643 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 20.9751 | 19.4758 | 20.0337 | 49.1348 |
CDS Structure of MLOC_12188
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12188.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g37650.1 |
+2 |
0.0 |
591 |
347/483 (72%) |
13107.m03877 protein GTPase-activating protein, putative, expressed |
| TAIR PP10 |
AT5G54310.1 |
+2 |
7e-114 |
354 |
235/497 (47%) |
| Symbols: NEV, AGD5 | ARF-GAP domain 5 | chr5:22057262-22061066 REVERSE LENGTH=483 |
