MLOC_12179 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.179825.33526.215730.8876
LEAShoots from the seedlings (10 cm shoot stage)58.217155.806667.432654.6025
INF1Young developing inflorescences (5mm)13.260511.68711.644411.4258
INF2Developing inflorescences (1-1.5 cm)7.095329.479978.7563610.5912
ROORoots from the seedlings (10 cm shoot stage)5.692667.113836.948989.41276
NODDeveloping tillers at six leaf stage, 3rd internode33.166331.753630.5449105.621
CAR5Developing grain, bracts removed (5 DPA)24.691927.068127.300429.9306
CAR15Developing grain, bracts removed (15 DPA)1.746211.876711.731194.76855



CDS Structure of MLOC_12179






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12179.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364386NoneNoneNoneNone
MLOC_12179.1CUST_1136_PI427708080AvailableAvailablecontig_1562741 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g17920.1 +1 0.0 566 301/383 (79%) 13102.m02004 protein glyoxalase family protein, putative, expressed
TAIR PP10 AT1G67280.1 +1 2e-174 499 254/351 (72%) Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein | chr1:25188563-25190547 REVERSE LENGTH=350