MLOC_12178 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2549930.1608930.1724290.195077
LEAShoots from the seedlings (10 cm shoot stage)0.4138050.0423420.101390.184563
INF1Young developing inflorescences (5mm)0.938431.146730.8421540.823135
INF2Developing inflorescences (1-1.5 cm)16.769321.909321.781221.4466
ROORoots from the seedlings (10 cm shoot stage)0.4619180.3069530.1537750.407878
NODDeveloping tillers at six leaf stage, 3rd internode0.01973370.02247660.01944720.0796689
CAR5Developing grain, bracts removed (5 DPA)24.552624.100524.130423.0035
CAR15Developing grain, bracts removed (15 DPA)5.873828.464876.214415.1169



CDS Structure of MLOC_12178






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12178.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12178.1CUST_8899_PI427708080AvailableAvailablecontig_1562740 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g41180.1 +3 3e-172 511 315/646 (49%) 13107.m04282 protein RNA-binding protein-like, putative, expressed
TAIR PP10 AT3G25150.1 +3 2e-62 219 169/483 (35%) Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9159362 REVERSE LENGTH=488