- Predicted Gene MLOC_12178
MLOC_12178 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 0.254993 | 0.160893 | 0.172429 | 0.195077 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0.413805 | 0.042342 | 0.10139 | 0.184563 |
| INF1 | Young developing inflorescences (5mm) | 0.93843 | 1.14673 | 0.842154 | 0.823135 |
| INF2 | Developing inflorescences (1-1.5 cm) | 16.7693 | 21.9093 | 21.7812 | 21.4466 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 0.461918 | 0.306953 | 0.153775 | 0.407878 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.0197337 | 0.0224766 | 0.0194472 | 0.0796689 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 24.5526 | 24.1005 | 24.1304 | 23.0035 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.87382 | 8.46487 | 6.2144 | 15.1169 |
CDS Structure of MLOC_12178
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_12178.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os07g41180.1 |
+3 |
3e-172 |
511 |
315/646 (49%) |
13107.m04282 protein RNA-binding protein-like, putative, expressed |
| TAIR PP10 |
AT3G25150.1 |
+3 |
2e-62 |
219 |
169/483 (35%) |
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr3:9157161-9159362 REVERSE LENGTH=488 |