MLOC_12117 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.718033.560213.828813.6466
LEAShoots from the seedlings (10 cm shoot stage)8.744612.932813.18039.44218
INF1Young developing inflorescences (5mm)5.64085.524616.284564.73192
INF2Developing inflorescences (1-1.5 cm)10.357911.382913.982812.2047
ROORoots from the seedlings (10 cm shoot stage)17.285613.880116.701316.688
NODDeveloping tillers at six leaf stage, 3rd internode6.1517614.871934.313551.2604
CAR5Developing grain, bracts removed (5 DPA)5.90365.954596.114215.56904
CAR15Developing grain, bracts removed (15 DPA)6.21456.529487.4863414.8138



CDS Structure of MLOC_12117






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12117.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_12117.1CUST_8886_PI427708080AvailableAvailablecontig_1562580 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g21970.1 +3 0.0 606 308/367 (84%) 13101.m02335 protein protein kinase, putative, expressed
TAIR PP10 AT3G17410.1 +3 5e-168 495 253/351 (72%) Protein kinase superfamily protein | chr3:5956601-5958882 FORWARD LENGTH=364