MLOC_12105 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.817210.00710.202711.1038
LEAShoots from the seedlings (10 cm shoot stage)10.122.306527.275417.5
INF1Young developing inflorescences (5mm)2.252512.970857.506813.98297
INF2Developing inflorescences (1-1.5 cm)3.064353.427738.405365.42778
ROORoots from the seedlings (10 cm shoot stage)47.765432.265122.926339.5782
NODDeveloping tillers at six leaf stage, 3rd internode19.865941.227129.5912111.805
CAR5Developing grain, bracts removed (5 DPA)4.991434.188653.637754.55532
CAR15Developing grain, bracts removed (15 DPA)0.3936450.4004970.4382491.07934



CDS Structure of MLOC_12105






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12105.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358018NoneNoneNoneNone
MLOC_12105.1CUST_1125_PI427708080AvailableAvailablecontig_1562535 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g32840.1 +1 0.0 890 441/568 (78%) 13109.m03286 protein nucleotide pyrophosphatase/phosphodiesterase, putative, expressed
TAIR PP10 AT5G50400.1 +1 0.0 733 355/568 (63%) | Symbols: ATPAP27, PAP27 | purple acid phosphatase 27 | chr5:20523575-20526231 REVERSE LENGTH=611