MLOC_12101 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.587310.4037560.3057910.432767
LEAShoots from the seedlings (10 cm shoot stage)1.953342.780242.435331.95906
INF1Young developing inflorescences (5mm)0.4341660.2822870.6018640.40653
INF2Developing inflorescences (1-1.5 cm)0.5148550.4673380.7736110.672677
ROORoots from the seedlings (10 cm shoot stage)9.6876810.78144.8240711.2472
NODDeveloping tillers at six leaf stage, 3rd internode1.913475.256461.573611.9914
CAR5Developing grain, bracts removed (5 DPA)0.6599270.9611361.617691.16917
CAR15Developing grain, bracts removed (15 DPA)0.0561620.1545490.2180170.390214



CDS Structure of MLOC_12101






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_12101.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373796NoneNoneNoneNone
MLOC_12101.1CUST_97_PI427708083AvailableAvailablecontig_1562526 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g13910.1 -3 1e-42 157 97/167 (58%) 13112.m01481 protein expressed protein
TAIR PP10 AT5G63350.1 -3 4e-18 86 53/144 (37%) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 103 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:25380216-25381124 REVERSE LENGTH=302